IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_smRNA.nexus --scf 100 --prefix concord_smRNA_ref -T 2
Seed:    25726 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 12:06:07 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_smRNA.nexus ... Nexus format detected
Alignment has 26 sequences with 135 columns, 129 distinct patterns
135 parsimony-informative, 0 singleton sites, 0 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.48%    passed     93.21%
   2  AldGig    0.74%    passed     73.13%
   3  ApaSpi    3.70%    passed     77.37%
   4  BatTri   42.22%    passed     78.51%
   5  CarIns    5.19%    passed     93.21%
   6  CheAbi    5.19%    passed     86.04%
   7  CheMyd    0.00%    passed     43.69%
   8  CheSer    3.70%    passed     91.82%
   9  ChrPic    0.00%    passed     94.46%
  10  CuoAmb    1.48%    passed     89.28%
  11  CuoMcc    0.00%    passed     93.11%
  12  DerCor    0.74%    passed     67.05%
  13  DerMaw    3.70%    passed     77.26%
  14  EmyOrb   46.67%    passed     63.72%
  15  EmySub    3.70%    passed     18.21%
  16  GopAga    0.74%    passed     93.67%
  17  MalTer    5.19%    passed     66.94%
  18  MauRee    1.48%    passed     70.65%
  19  MesTub    2.22%    passed     61.46%
  20  PelCas    3.70%    passed     65.05%
  21  PelSin    1.48%    passed     85.95%
  22  PlaMeg    0.00%    passed     96.65%
  23  PodExp   14.81%    passed     54.53%
  24  SteCar    1.48%    passed     80.73%
  25  TerCar    2.22%    passed     95.35%
  26  TraScr    1.48%    passed     84.70%
****  TOTAL     5.90%  0 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.002 sec
Tree with concordance factors written to concord_smRNA_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_smRNA_ref.cf.tree.nex
Tree with branch IDs written to concord_smRNA_ref.cf.branch
Concordance factors per branch printed to concord_smRNA_ref.cf.stat
Date and Time: Mon May  3 12:06:07 2021
